Manual neuron tracing in light microscopy stacks can take hundreds of hours for just a handful of neurons. LMtrace® is the first online neuron tracing service for light microscopy datasets. It increases the efficacy of neuron-based screening assays by orders of magnitude and enables high-throughput analysis of neuronal morphology. Just upload your datasets and we take it from there. The quality-checked skeleton reconstructions are delivered within 1–2 weeks directly to your mailbox for download.
3dEMtrace: The first easy-to-use online cell segmentation service
To study cell function in various contexts, scientists assess interactions between ultrastructural cellular compartments and organelles using volume electron microscopy. To date, scientists had to spend hundreds of hours to manually outline the shape of organelles in just a handful of datasets. Consequently, manual image annotation represents an important bottleneck for the analysis of 3D electron microscopy images. With 3dEMtrace, we offer an online cell segmentation service that delivers segmentations of complex cell organelles by our team of machine-learning experts and scientists.
We specialize in reconstructing 2D and 3D light or electron microscope images. Our workflows integrate state-of-the-art deep learning algorithms, manual image annotation, and quality control by biologists.
Together with partners in Hong Kong, we maintain a group of more than 30 professional image annotators with thousands of hours of experience in biomedical and neuroanatomical image annotation.
State-of-the-art machine learning workflows
Data curation by biologists
Highest scientific standards
Automated Image Analysis & Workflow Development
We provide automated annotation services for biological image datasets. Our past projects include segmentation of various organelles, tracing of neurons, and automated detection of cell somata.
Depending on your structure of interest, we can quickly adapt our own CNN pipeline for your annotation task. Your dataset is transferred and stored in an encrypted form on our servers for the duration of the analysis, and the results can be delivered in any format you need, accompanied by an extensive report.